Task 98460849

Name	ebola_RdRp_v1_sidock_00374170_r2_s-24.0_0
Workunit	69038694
Created	5 Jan 2026, 15:09:28 UTC
Sent	7 Jan 2026, 15:48:00 UTC
Report deadline	11 Jan 2026, 15:48:00 UTC
Received	7 Jan 2026, 21:48:57 UTC
Server state	Over
Outcome	Validate error
Client state	Done
Exit status	0 (0x00000000)
Computer ID	81586
Run time	5 hours 0 min 40 sec
CPU time	4 hours 58 min 18 sec
Validate state	Invalid
Credit	0.00
Device peak FLOPS	1.00 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	238.86 MB
Peak swap size	244.94 MB
Peak disk usage	20.06 MB
Stderr output

<core_client_version>7.20.5</core_client_version>
<![CDATA[
<stderr_txt>
16:27:50 (2729820): wrapper (7.17.26016): starting
16:27:50 (2729820): wrapper (7.17.26016): starting
16:27:50 (2729820): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/127/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x563353e3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7fc983bae050]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x1a)[0x7fc983c0aefa]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x563353e5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x563353e7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7fc983bae050]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x65)[0x7fc983c41545]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x13)[0x7fc983c45e53]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x45)[0x7fc983c71245]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x563353e51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x563353e1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2724a)[0x7fc983b9924a]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x85)[0x7fc983b99305]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x563353e1aa3a]

Exiting...
18:52:45 (2748615): wrapper (7.17.26016): starting
18:52:46 (2748615): wrapper (7.17.26016): starting
18:52:46 (2748615): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/127/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55805243ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7ffaccc5d050]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x1a)[0x7ffacccb9efa]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55805245c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55805247b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7ffaccc5d050]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x65)[0x7ffacccf0545]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x13)[0x7ffacccf4e53]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x45)[0x7ffaccd20245]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x558052451adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55805241e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2724a)[0x7ffaccc4824a]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x85)[0x7ffaccc48305]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55805241aa3a]

Exiting...
19:00:19 (2750628): wrapper (7.17.26016): starting
19:00:19 (2750628): wrapper (7.17.26016): starting
19:00:19 (2750628): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/127/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x559d4583ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7fb40be58050]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x1a)[0x7fb40beb4efa]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x559d4585c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x559d4587b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7fb40be58050]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x65)[0x7fb40beeb545]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x13)[0x7fb40beefe53]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x45)[0x7fb40bf1b245]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x559d45851adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x559d4581e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2724a)[0x7fb40be4324a]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x85)[0x7fb40be43305]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x559d4581aa3a]

Exiting...
21:35:16 (2770376): wrapper (7.17.26016): starting
21:35:16 (2770376): wrapper (7.17.26016): starting
21:35:16 (2770376): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/127/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5598b1e3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7f7854a45050]
/lib/x86_64-linux-gnu/libc.so.6(+0x8aeec)[0x7f7854a93eec]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x12)[0x7f7854a44fb2]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7f7854a2f472]
/lib/x86_64-linux-gnu/libc.so.6(+0x7f42f)[0x7f7854a8842f]
/lib/x86_64-linux-gnu/libc.so.6(+0x9486a)[0x7f7854a9d86a]
/lib/x86_64-linux-gnu/libc.so.6(+0x965f4)[0x7f7854a9f5f4]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x6f)[0x7f7854aa1f4f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5598b1e5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5598b1e7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7f7854a45050]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x65)[0x7f7854ad8545]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x13)[0x7f7854adce53]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x45)[0x7f7854b08245]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5598b1e51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5598b1e1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2724a)[0x7f7854a3024a]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x85)[0x7f7854a30305]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5598b1e1aa3a]

Exiting...
21:39:29 (2791957): wrapper (7.17.26016): starting
21:39:38 (2791957): wrapper (7.17.26016): starting
21:39:38 (2791957): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/127/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:40:18 (2791957): cmdock exited; CPU time 38.830119
21:40:18 (2791957): called boinc_finish(0)

</stderr_txt>
]]>