Task 98573765

Name ebola_RdRp_v1_sidock_00381044_r3_s-24.0_1
Workunit 69066191
Created 9 Jan 2026, 14:11:12 UTC
Sent 11 Jan 2026, 14:34:06 UTC
Report deadline 15 Jan 2026, 14:34:06 UTC
Received 16 Jan 2026, 2:25:06 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 81442
Run time 9 hours 31 min 9 sec
CPU time 9 hours 23 min 11 sec
Validate state Valid
Credit 807.20
Device peak FLOPS 5.32 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 239.31 MB
Peak swap size 246.95 MB
Peak disk usage 20.26 MB

Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
15:53:57 (347531): wrapper (7.17.26016): starting
15:53:57 (347531): wrapper (7.17.26016): starting
15:53:57 (347531): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (21 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c) [0x5580b963ff8c]
/lib64/libc.so.6(+0x1a290) [0x7fe7e3298290]
/lib64/libc.so.6(+0x743cc) [0x7fe7e32f23cc]
/lib64/libc.so.6(gsignal+0x1e) [0x7fe7e329815e]
/lib64/libc.so.6(abort+0x26) [0x7fe7e327f6d0]
/lib64/libc.so.6(+0x273b) [0x7fe7e328073b]
/lib64/libc.so.6(+0x7e665) [0x7fe7e32fc665]
/lib64/libc.so.6(+0x7e684) [0x7fe7e32fc684]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd) [0x5580b965c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4) [0x5580b967b8e4]
/lib64/libc.so.6(+0x1a290) [0x7fe7e3298290]
/lib64/libc.so.6(+0x7a982) [0x7fe7e32f8982]
/lib64/libc.so.6(+0x6ec3c) [0x7fe7e32ecc3c]
/lib64/libc.so.6(clock_nanosleep+0x32) [0x7fe7e333cb62]
/lib64/libc.so.6(nanosleep+0x17) [0x7fe7e3348b37]
/lib64/libc.so.6(usleep+0x4a) [0x7fe7e337313a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf) [0x5580b9651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784) [0x5580b961e784]
/lib64/libc.so.6(+0x35b5) [0x7fe7e32815b5]
/lib64/libc.so.6(__libc_start_main+0x88) [0x7fe7e3281668]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a) [0x5580b961aa3a]

Exiting...
21:33:58 (29981): wrapper (7.17.26016): starting
21:33:58 (29981): wrapper (7.17.26016): starting
21:33:58 (29981): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
19:36:55 (21338): wrapper (7.17.26016): starting
19:36:55 (21338): wrapper (7.17.26016): starting
19:36:55 (21338): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:15:56 (52304): wrapper (7.17.26016): starting
21:15:56 (52304): wrapper (7.17.26016): starting
21:15:56 (52304): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
03:24:57 (52304): cmdock exited; CPU time 18564.616750
03:24:57 (52304): called boinc_finish(0)

</stderr_txt>
]]>


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