Task 98591706

Name ebola_RdRp_v1_sidock_00403386_r2_s-24.0_0
Workunit 69155558
Created 11 Jan 2026, 17:21:58 UTC
Sent 12 Jan 2026, 6:30:43 UTC
Report deadline 16 Jan 2026, 6:30:43 UTC
Received 13 Jan 2026, 9:16:52 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 54584
Run time 7 hours 52 min 8 sec
CPU time 7 hours 51 min 58 sec
Validate state Valid
Credit 525.80
Device peak FLOPS 9.95 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 240.50 MB
Peak swap size 247.34 MB
Peak disk usage 20.14 MB

Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
01:58:12 (44921): wrapper (7.17.26016): starting
01:58:12 (44921): wrapper (7.17.26016): starting
01:58:12 (44921): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/29/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55bb2bc3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7f0bcb245330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7f0bcb29eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7f0bcb24527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7f0bcb2288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7f0bcb2297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x7f0bcb2a8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x7f0bcb2ab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7f0bcb2addae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55bb2bc5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55bb2bc7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7f0bcb245330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7f0bcb2ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7f0bcb2f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7f0bcb32975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55bb2bc51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55bb2bc1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7f0bcb22a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7f0bcb22a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55bb2bc1aa3a]

Exiting...
23:56:14 (2717): wrapper (7.17.26016): starting
23:56:14 (2717): wrapper (7.17.26016): starting
23:56:14 (2717): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/29/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
03:16:39 (2717): cmdock exited; CPU time 12021.566997
03:16:39 (2717): called boinc_finish(0)

</stderr_txt>
]]>


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