Task 98857133

Name ebola_RdRp_v1_sidock_00463854_r1_s-24.0_0
Workunit 69397429
Created 21 Jan 2026, 1:44:54 UTC
Sent 21 Jan 2026, 18:04:06 UTC
Report deadline 25 Jan 2026, 18:04:06 UTC
Received 23 Jan 2026, 3:00:31 UTC
Server state Over
Outcome Validate error
Client state Done
Exit status 0 (0x00000000)
Computer ID 79764
Run time 6 hours 15 min 42 sec
CPU time 6 hours 15 min 42 sec
Validate state Invalid
Credit 0.00
Device peak FLOPS 9.98 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 237.35 MB
Peak swap size 244.61 MB
Peak disk usage 20.21 MB

Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
12:21:25 (44839): wrapper (7.17.26016): starting
12:21:25 (44839): wrapper (7.17.26016): starting
12:21:25 (44839): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/41/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x577fa6c3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x781b0f045330]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x781b0f0add55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x577fa6c5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x577fa6c7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x781b0f045330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x781b0f0ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x781b0f0f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x781b0f12975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x577fa6c51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x577fa6c1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x781b0f02a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x781b0f02a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x577fa6c1aa3a]

Exiting...
21:00:03 (109255): wrapper (7.17.26016): starting
21:00:03 (109255): wrapper (7.17.26016): starting
21:00:03 (109255): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/41/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
20:18:52 (1980): wrapper (7.17.26016): starting
20:18:52 (1980): wrapper (7.17.26016): starting
20:18:52 (1980): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/41/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:00:02 (10200): wrapper (7.17.26016): starting
21:00:02 (10200): wrapper (7.17.26016): starting
21:00:02 (10200): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/41/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:00:06 (10200): cmdock exited; CPU time 3.816109
21:00:06 (10200): called boinc_finish(0)

</stderr_txt>
]]>


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