Task 98931250

Name	ebola_RdRp_v1_sidock_00480261_r1_s-24.0_0
Workunit	69463057
Created	24 Jan 2026, 16:11:01 UTC
Sent	24 Jan 2026, 18:09:38 UTC
Report deadline	28 Jan 2026, 18:09:38 UTC
Received	25 Jan 2026, 10:48:32 UTC
Server state	Over
Outcome	Computation error
Client state	Aborted by user
Exit status	203 (0x000000CB) EXIT_ABORTED_VIA_GUI
Computer ID	82929
Run time	13 hours 55 min 57 sec
CPU time	13 hours 55 min 4 sec
Validate state	Invalid
Credit	0.00
Device peak FLOPS	1.00 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	238.18 MB
Peak swap size	247.85 MB
Peak disk usage	20.21 MB
Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<message>
aborted by user</message>
<stderr_txt>
19:09:43 (2628852): wrapper (7.17.26016): starting
19:09:43 (2628852): wrapper (7.17.26016): starting
19:09:43 (2628852): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/9/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
07:24:17 (3763651): wrapper (7.17.26016): starting
07:24:18 (3763651): wrapper (7.17.26016): starting
07:24:18 (3763651): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/9/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
07:35:02 (3780695): wrapper (7.17.26016): starting
07:35:02 (3780695): wrapper (7.17.26016): starting
07:35:02 (3780695): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/9/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
07:38:45 (3786349): wrapper (7.17.26016): starting
07:38:45 (3786349): wrapper (7.17.26016): starting
07:38:45 (3786349): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/9/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (21 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c) [0x5fd90123ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x3fdf0) [0x744864c1ddf0]
/lib/x86_64-linux-gnu/libc.so.6(+0x9495c) [0x744864c7295c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x12) [0x744864c1dcc2]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x22) [0x744864c064ac]
/lib/x86_64-linux-gnu/libc.so.6(+0x29291) [0x744864c07291]
/lib/x86_64-linux-gnu/libc.so.6(+0x9e465) [0x744864c7c465]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x19c) [0x744864c813dc]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd) [0x5fd90125c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4) [0x5fd90127b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x3fdf0) [0x744864c1ddf0]
/lib/x86_64-linux-gnu/libc.so.6(+0x9a9ee) [0x744864c789ee]
/lib/x86_64-linux-gnu/libc.so.6(+0x8f668) [0x744864c6d668]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x2a) [0x744864cb9f7a]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x13) [0x744864cc5393]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x43) [0x744864cee373]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf) [0x5fd901251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784) [0x5fd90121e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29ca8) [0x744864c07ca8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x85) [0x744864c07d65]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a) [0x5fd90121aa3a]

Exiting...
08:31:21 (3866439): wrapper (7.17.26016): starting
08:31:22 (3866439): wrapper (7.17.26016): starting
08:31:22 (3866439): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/9/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (16 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c) [0x63a327a3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x3fdf0) [0x7f854197edf0]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x22) [0x7f85419e2262]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd) [0x63a327a5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4) [0x63a327a7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x3fdf0) [0x7f854197edf0]
/lib/x86_64-linux-gnu/libc.so.6(+0x9a9ee) [0x7f85419d99ee]
/lib/x86_64-linux-gnu/libc.so.6(+0x8f668) [0x7f85419ce668]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x2a) [0x7f8541a1af7a]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x13) [0x7f8541a26393]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x43) [0x7f8541a4f373]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf) [0x63a327a51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784) [0x63a327a1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29ca8) [0x7f8541968ca8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x85) [0x7f8541968d65]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a) [0x63a327a1aa3a]

Exiting...
08:47:21 (3376): wrapper (7.17.26016): starting
08:47:21 (3376): wrapper (7.17.26016): starting
08:47:21 (3376): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/9/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
08:51:37 (14374): wrapper (7.17.26016): starting
08:51:37 (14374): wrapper (7.17.26016): starting
08:51:37 (14374): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/9/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
08:59:06 (25946): wrapper (7.17.26016): starting
08:59:06 (25946): wrapper (7.17.26016): starting
08:59:06 (25946): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/9/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
09:06:51 (37839): wrapper (7.17.26016): starting
09:06:51 (37839): wrapper (7.17.26016): starting
09:06:51 (37839): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/9/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
10:10:04 (133145): wrapper (7.17.26016): starting
10:10:04 (133145): wrapper (7.17.26016): starting
10:10:04 (133145): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/9/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
10:12:53 (137435): wrapper (7.17.26016): starting
10:12:53 (137435): wrapper (7.17.26016): starting
10:12:53 (137435): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/9/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
10:15:49 (141850): wrapper (7.17.26016): starting
10:15:49 (141850): wrapper (7.17.26016): starting
10:15:49 (141850): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/9/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
10:18:30 (145789): wrapper (7.17.26016): starting
10:18:30 (145789): wrapper (7.17.26016): starting
10:18:30 (145789): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/9/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
11:28:26 (1714): wrapper (7.17.26016): starting
11:28:26 (1714): wrapper (7.17.26016): starting
11:28:26 (1714): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/9/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)

</stderr_txt>
]]>