Task 99086281

Name ebola_RdRp_v1_sidock_00517123_r4_s-24.0_0
Workunit 69610508
Created 28 Jan 2026, 2:40:55 UTC
Sent 31 Jan 2026, 6:10:40 UTC
Report deadline 4 Feb 2026, 6:10:40 UTC
Received 1 Feb 2026, 1:06:58 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 80660
Run time 7 hours 49 min 14 sec
CPU time 6 hours 12 min 8 sec
Validate state Valid
Credit 688.88
Device peak FLOPS 10.45 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 238.75 MB
Peak swap size 246.52 MB
Peak disk usage 20.35 MB

Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
22:18:41 (215356): wrapper (7.17.26016): starting
22:18:41 (215356): wrapper (7.17.26016): starting
22:18:41 (215356): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/11/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid size
SIGABRT: abort called
Stack trace (21 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c) [0x56538ec3ff8c]
/usr/lib/libc.so.6(+0x44aa0) [0x7f8866c44aa0]
/usr/lib/libc.so.6(pthread_kill+0x12b) [0x7f8866cac56b]
/usr/lib/libc.so.6(gsignal+0x18) [0x7f8866c44968]
/usr/lib/libc.so.6(abort+0x27) [0x7f8866c2560f]
/usr/lib/libc.so.6(+0x26876) [0x7f8866c26876]
/usr/lib/libc.so.6(+0xb73e7) [0x7f8866cb73e7]
/usr/lib/libc.so.6(+0xb7401) [0x7f8866cb7401]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd) [0x56538ec5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4) [0x56538ec7b8e4]
/usr/lib/libc.so.6(+0x44aa0) [0x7f8866c44aa0]
/usr/lib/libc.so.6(+0xb2e42) [0x7f8866cb2e42]
/usr/lib/libc.so.6(+0xa644f) [0x7f8866ca644f]
/usr/lib/libc.so.6(clock_nanosleep+0x2e) [0x7f8866cfb87e]
/usr/lib/libc.so.6(nanosleep+0x17) [0x7f8866d0baf7]
/usr/lib/libc.so.6(usleep+0x4b) [0x7f8866d40e9b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf) [0x56538ec51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784) [0x56538ec1e784]
/usr/lib/libc.so.6(+0x27b0b) [0x7f8866c27b0b]
/usr/lib/libc.so.6(__libc_start_main+0x8b) [0x7f8866c27bbb]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a) [0x56538ec1aa3a]

Exiting...
10:54:23 (32037): wrapper (7.17.26016): starting
10:54:23 (32037): wrapper (7.17.26016): starting
10:54:23 (32037): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/11/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
17:06:46 (32037): cmdock exited; CPU time 15076.970415
17:06:46 (32037): called boinc_finish(0)

</stderr_txt>
]]>


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