Task 99086998

Name ebola_RdRp_v1_sidock_00517299_r4_s-24.0_0
Workunit 69611212
Created 28 Jan 2026, 2:41:33 UTC
Sent 31 Jan 2026, 6:59:24 UTC
Report deadline 4 Feb 2026, 6:59:24 UTC
Received 1 Feb 2026, 1:53:24 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 80660
Run time 7 hours 45 min 43 sec
CPU time 6 hours 13 min 17 sec
Validate state Valid
Credit 685.57
Device peak FLOPS 10.45 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 238.89 MB
Peak swap size 247.00 MB
Peak disk usage 20.37 MB

Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
23:06:25 (229815): wrapper (7.17.26016): starting
23:06:25 (229815): wrapper (7.17.26016): starting
23:06:25 (229815): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/17/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid size
SIGABRT: abort called
Stack trace (21 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c) [0x56422d23ff8c]
/usr/lib/libc.so.6(+0x44aa0) [0x7f3ac9a44aa0]
/usr/lib/libc.so.6(pthread_kill+0x12b) [0x7f3ac9aac56b]
/usr/lib/libc.so.6(gsignal+0x18) [0x7f3ac9a44968]
/usr/lib/libc.so.6(abort+0x27) [0x7f3ac9a2560f]
/usr/lib/libc.so.6(+0x26876) [0x7f3ac9a26876]
/usr/lib/libc.so.6(+0xb73e7) [0x7f3ac9ab73e7]
/usr/lib/libc.so.6(+0xb7401) [0x7f3ac9ab7401]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd) [0x56422d25c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4) [0x56422d27b8e4]
/usr/lib/libc.so.6(+0x44aa0) [0x7f3ac9a44aa0]
/usr/lib/libc.so.6(+0xb2e42) [0x7f3ac9ab2e42]
/usr/lib/libc.so.6(+0xa644f) [0x7f3ac9aa644f]
/usr/lib/libc.so.6(clock_nanosleep+0x2e) [0x7f3ac9afb87e]
/usr/lib/libc.so.6(nanosleep+0x17) [0x7f3ac9b0baf7]
/usr/lib/libc.so.6(usleep+0x4b) [0x7f3ac9b40e9b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf) [0x56422d251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784) [0x56422d21e784]
/usr/lib/libc.so.6(+0x27b0b) [0x7f3ac9a27b0b]
/usr/lib/libc.so.6(__libc_start_main+0x8b) [0x7f3ac9a27bbb]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a) [0x56422d21aa3a]

Exiting...
10:54:23 (32056): wrapper (7.17.26016): starting
10:54:23 (32056): wrapper (7.17.26016): starting
10:54:23 (32056): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/17/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
17:53:12 (32056): cmdock exited; CPU time 17554.699344
17:53:12 (32056): called boinc_finish(0)

</stderr_txt>
]]>


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