Task 99087044

Name ebola_RdRp_v1_sidock_00517311_r2_s-24.0_0
Workunit 69611258
Created 28 Jan 2026, 2:41:35 UTC
Sent 31 Jan 2026, 7:00:29 UTC
Report deadline 4 Feb 2026, 7:00:29 UTC
Received 1 Feb 2026, 2:11:49 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 80660
Run time 7 hours 48 min 11 sec
CPU time 6 hours 17 min 10 sec
Validate state Valid
Credit 692.71
Device peak FLOPS 10.45 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 238.59 MB
Peak swap size 247.51 MB
Peak disk usage 20.31 MB

Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
23:20:44 (233913): wrapper (7.17.26016): starting
23:20:44 (233913): wrapper (7.17.26016): starting
23:20:44 (233913): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid size
SIGABRT: abort called
Stack trace (21 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c) [0x556f9983ff8c]
/usr/lib/libc.so.6(+0x44aa0) [0x7f7b55444aa0]
/usr/lib/libc.so.6(pthread_kill+0x12b) [0x7f7b554ac56b]
/usr/lib/libc.so.6(gsignal+0x18) [0x7f7b55444968]
/usr/lib/libc.so.6(abort+0x27) [0x7f7b5542560f]
/usr/lib/libc.so.6(+0x26876) [0x7f7b55426876]
/usr/lib/libc.so.6(+0xb73e7) [0x7f7b554b73e7]
/usr/lib/libc.so.6(+0xb7401) [0x7f7b554b7401]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd) [0x556f9985c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4) [0x556f9987b8e4]
/usr/lib/libc.so.6(+0x44aa0) [0x7f7b55444aa0]
/usr/lib/libc.so.6(+0xb2e42) [0x7f7b554b2e42]
/usr/lib/libc.so.6(+0xa644f) [0x7f7b554a644f]
/usr/lib/libc.so.6(clock_nanosleep+0x2e) [0x7f7b554fb87e]
/usr/lib/libc.so.6(nanosleep+0x17) [0x7f7b5550baf7]
/usr/lib/libc.so.6(usleep+0x4b) [0x7f7b55540e9b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf) [0x556f99851adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784) [0x556f9981e784]
/usr/lib/libc.so.6(+0x27b0b) [0x7f7b55427b0b]
/usr/lib/libc.so.6(__libc_start_main+0x8b) [0x7f7b55427bbb]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a) [0x556f9981aa3a]

Exiting...
10:54:23 (32067): wrapper (7.17.26016): starting
10:54:23 (32067): wrapper (7.17.26016): starting
10:54:23 (32067): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
18:11:31 (32067): cmdock exited; CPU time 18527.787280
18:11:31 (32067): called boinc_finish(0)

</stderr_txt>
]]>


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