Task 99109912

Name	ebola_RdRp_v1_sidock_00520764_r2_s-24.0_0
Workunit	69625070
Created	31 Jan 2026, 23:42:57 UTC
Sent	1 Feb 2026, 3:49:09 UTC
Report deadline	5 Feb 2026, 3:49:09 UTC
Received	2 Feb 2026, 21:21:06 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	83028
Run time	1 days 13 hours 22 min 18 sec
CPU time	1 days 13 hours 12 min 41 sec
Validate state	Valid
Credit	1,089.48
Device peak FLOPS	1.00 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	240.48 MB
Peak swap size	247.48 MB
Peak disk usage	20.59 MB
Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
01:22:09 (9874): wrapper (7.17.26016): starting
01:22:09 (9874): wrapper (7.17.26016): starting
01:22:09 (9874): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/14/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x60627103ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x72d086e45330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x72d086e9eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x72d086e4527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x72d086e288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x72d086e297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x72d086ea8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x72d086eab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x72d086eaddae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x60627105c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x60627107b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x72d086e45330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x72d086eecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x72d086ef9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x72d086f2975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x606271051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x60627101e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x72d086e2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x72d086e2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x60627101aa3a]

Exiting...
17:58:42 (2778): wrapper (7.17.26016): starting
17:58:43 (2778): wrapper (7.17.26016): starting
17:58:43 (2778): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/14/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5e0dab43ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7cba6ea45330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7cba6ea9eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7cba6ea4527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7cba6ea288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7cba6ea297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x7cba6eaa8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x7cba6eaab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7cba6eaaddae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5e0dab45c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5e0dab47b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7cba6ea45330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7cba6eaecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7cba6eaf9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7cba6eb2975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5e0dab451adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5e0dab41e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7cba6ea2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7cba6ea2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5e0dab41aa3a]

Exiting...
18:03:17 (2768): wrapper (7.17.26016): starting
18:03:17 (2768): wrapper (7.17.26016): starting
18:03:17 (2768): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/14/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x589dcca3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x78db52645330]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x78db526add55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x589dcca5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x589dcca7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x78db52645330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x78db526ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x78db526f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x78db5272975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x589dcca51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x589dcca1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x78db5262a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x78db5262a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x589dcca1aa3a]

Exiting...
19:16:21 (2891): wrapper (7.17.26016): starting
19:16:21 (2891): wrapper (7.17.26016): starting
19:16:21 (2891): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/14/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x58901c63ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x704e0ac45330]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x704e0acadd55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x58901c65c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x58901c67b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x704e0ac45330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x704e0acecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x704e0acf9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x704e0ad2975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x58901c651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x58901c61e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x704e0ac2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x704e0ac2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x58901c61aa3a]

Exiting...
09:54:44 (2898): wrapper (7.17.26016): starting
09:54:45 (2898): wrapper (7.17.26016): starting
09:54:45 (2898): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/14/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
15:20:52 (2898): cmdock exited; CPU time 19310.737447
15:20:52 (2898): called boinc_finish(0)

</stderr_txt>
]]>