Task 99109931

Name	ebola_RdRp_v1_sidock_00520769_r2_s-24.0_0
Workunit	69625090
Created	31 Jan 2026, 23:42:59 UTC
Sent	1 Feb 2026, 3:49:09 UTC
Report deadline	5 Feb 2026, 3:49:09 UTC
Received	2 Feb 2026, 21:11:01 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	83028
Run time	1 days 13 hours 47 min 54 sec
CPU time	1 days 13 hours 39 min 16 sec
Validate state	Valid
Credit	1,134.68
Device peak FLOPS	1.00 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	239.80 MB
Peak swap size	246.68 MB
Peak disk usage	20.72 MB
Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
00:51:31 (9457): wrapper (7.17.26016): starting
00:51:31 (9457): wrapper (7.17.26016): starting
00:51:31 (9457): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/10/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x60630203ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7c46ed645330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7c46ed69eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7c46ed64527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7c46ed6288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7c46ed6297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x7c46ed6a8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x7c46ed6ab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7c46ed6addae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x60630205c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x60630207b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7c46ed645330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7c46ed6ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7c46ed6f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7c46ed72975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x606302051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x60630201e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7c46ed62a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7c46ed62a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x60630201aa3a]

Exiting...
17:58:42 (2777): wrapper (7.17.26016): starting
17:58:43 (2777): wrapper (7.17.26016): starting
17:58:43 (2777): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/10/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5c0af623ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x742d2f245330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x742d2f29eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x742d2f24527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x742d2f2288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x742d2f2297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x742d2f2a8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x742d2f2ab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x742d2f2addae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5c0af625c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5c0af627b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x742d2f245330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x742d2f2ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x742d2f2f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x742d2f32975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5c0af6251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5c0af621e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x742d2f22a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x742d2f22a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5c0af621aa3a]

Exiting...
18:03:17 (2767): wrapper (7.17.26016): starting
18:03:17 (2767): wrapper (7.17.26016): starting
18:03:17 (2767): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/10/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55ed0b23ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7518b1845330]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x7518b18add55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55ed0b25c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55ed0b27b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7518b1845330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7518b18ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7518b18f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7518b192975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55ed0b251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55ed0b21e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7518b182a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7518b182a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55ed0b21aa3a]

Exiting...
19:16:21 (2890): wrapper (7.17.26016): starting
19:16:21 (2890): wrapper (7.17.26016): starting
19:16:21 (2890): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/10/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x58b8dba3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x757fe1045330]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x757fe10add55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x58b8dba5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x58b8dba7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x757fe1045330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x757fe10ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x757fe10f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x757fe112975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x58b8dba51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x58b8dba1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x757fe102a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x757fe102a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x58b8dba1aa3a]

Exiting...
09:54:44 (2897): wrapper (7.17.26016): starting
09:54:45 (2897): wrapper (7.17.26016): starting
09:54:45 (2897): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/10/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
15:10:51 (2897): cmdock exited; CPU time 18754.170852
15:10:51 (2897): called boinc_finish(0)

</stderr_txt>
]]>