Task 99120262

Name ebola_RdRp_v1_sidock_00523352_r1_s-24.0_0
Workunit 69635421
Created 31 Jan 2026, 23:52:25 UTC
Sent 1 Feb 2026, 14:19:30 UTC
Report deadline 5 Feb 2026, 14:19:30 UTC
Received 2 Feb 2026, 17:55:36 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 65808
Run time 8 hours 50 min 20 sec
CPU time 8 hours 50 min 20 sec
Validate state Valid
Credit 616.19
Device peak FLOPS 3.46 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 239.08 MB
Peak swap size 246.45 MB
Peak disk usage 20.51 MB

Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
19:19:36 (26066): wrapper (7.17.26016): starting
19:19:36 (26066): wrapper (7.17.26016): starting
19:19:36 (26066): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x588309a3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x77c94cc42520]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x77c94cc969fc]
/lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x77c94cc42476]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x77c94cc287f3]
/lib/x86_64-linux-gnu/libc.so.6(+0x89677)[0x77c94cc89677]
/lib/x86_64-linux-gnu/libc.so.6(+0xa0cfc)[0x77c94cca0cfc]
/lib/x86_64-linux-gnu/libc.so.6(+0xa2a44)[0x77c94cca2a44]
/lib/x86_64-linux-gnu/libc.so.6(free+0x73)[0x77c94cca5453]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x588309a5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x588309a7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x77c94cc42520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x77c94cce57f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x77c94ccea677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x77c94cd1bf9f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x588309a51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x588309a1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x77c94cc29d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x77c94cc29e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x588309a1aa3a]

Exiting...
07:20:48 (3008): wrapper (7.17.26016): starting
07:20:48 (3008): wrapper (7.17.26016): starting
07:20:48 (3008): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
16:23:39 (2606): wrapper (7.17.26016): starting
16:23:39 (2606): wrapper (7.17.26016): starting
16:23:39 (2606): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
18:55:23 (2606): cmdock exited; CPU time 7301.640690
18:55:23 (2606): called boinc_finish(0)

</stderr_txt>
]]>


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