Task 99121080

Name	ebola_RdRp_v1_sidock_00523550_r4_s-24.0_0
Workunit	69636216
Created	31 Jan 2026, 23:53:08 UTC
Sent	1 Feb 2026, 15:04:52 UTC
Report deadline	5 Feb 2026, 15:04:52 UTC
Received	2 Feb 2026, 20:17:45 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	83028
Run time	1 days 0 hours 28 min 33 sec
CPU time	1 days 0 hours 22 min 25 sec
Validate state	Valid
Credit	727.52
Device peak FLOPS	1.00 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	240.35 MB
Peak swap size	247.34 MB
Peak disk usage	20.50 MB
Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
13:19:56 (16134): wrapper (7.17.26016): starting
13:19:56 (16134): wrapper (7.17.26016): starting
13:19:56 (16134): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x59821fe3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x76285ec45330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x76285ec9eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x76285ec4527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x76285ec288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x76285ec297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x76285eca8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x76285ecab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x76285ecaddae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x59821fe5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x59821fe7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x76285ec45330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x76285ececadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x76285ecf9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x76285ed2975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x59821fe51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x59821fe1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x76285ec2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x76285ec2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x59821fe1aa3a]

Exiting...
17:58:42 (2789): wrapper (7.17.26016): starting
17:58:43 (2789): wrapper (7.17.26016): starting
17:58:43 (2789): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x623e2e83ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7e2d91045330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7e2d9109eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7e2d9104527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7e2d910288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7e2d910297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x7e2d910a8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x7e2d910ab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7e2d910addae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x623e2e85c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x623e2e87b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7e2d91045330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7e2d910ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7e2d910f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7e2d9112975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x623e2e851adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x623e2e81e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7e2d9102a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7e2d9102a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x623e2e81aa3a]

Exiting...
18:03:17 (2779): wrapper (7.17.26016): starting
18:03:17 (2779): wrapper (7.17.26016): starting
18:03:17 (2779): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55caa563ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7c14ca445330]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x7c14ca4add55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55caa565c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55caa567b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7c14ca445330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7c14ca4ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7c14ca4f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7c14ca52975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55caa5651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55caa561e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7c14ca42a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7c14ca42a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55caa561aa3a]

Exiting...
19:16:21 (2902): wrapper (7.17.26016): starting
19:16:21 (2902): wrapper (7.17.26016): starting
19:16:21 (2902): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x6517f5e3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7cc35b045330]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x7cc35b0add55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x6517f5e5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x6517f5e7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7cc35b045330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7cc35b0ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7cc35b0f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7cc35b12975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x6517f5e51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x6517f5e1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7cc35b02a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7cc35b02a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x6517f5e1aa3a]

Exiting...
09:54:44 (2909): wrapper (7.17.26016): starting
09:54:45 (2909): wrapper (7.17.26016): starting
09:54:45 (2909): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
14:17:35 (2909): cmdock exited; CPU time 15651.311876
14:17:35 (2909): called boinc_finish(0)

</stderr_txt>
]]>