Task 99121081

Name	ebola_RdRp_v1_sidock_00523557_r3_s-24.0_0
Workunit	69636243
Created	31 Jan 2026, 23:53:08 UTC
Sent	1 Feb 2026, 15:04:52 UTC
Report deadline	5 Feb 2026, 15:04:52 UTC
Received	2 Feb 2026, 20:37:21 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	83028
Run time	1 days 1 hours 3 min 53 sec
CPU time	1 days 0 hours 57 min 21 sec
Validate state	Valid
Credit	745.46
Device peak FLOPS	1.00 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	239.41 MB
Peak swap size	246.90 MB
Peak disk usage	20.40 MB
Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
13:01:14 (16079): wrapper (7.17.26016): starting
13:01:14 (16079): wrapper (7.17.26016): starting
13:01:14 (16079): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/11/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5af747c3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7637a2a45330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7637a2a9eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7637a2a4527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7637a2a288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7637a2a297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x7637a2aa8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x7637a2aab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7637a2aaddae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5af747c5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5af747c7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7637a2a45330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7637a2aecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7637a2af9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7637a2b2975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5af747c51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5af747c1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7637a2a2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7637a2a2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5af747c1aa3a]

Exiting...
17:58:42 (2788): wrapper (7.17.26016): starting
17:58:43 (2788): wrapper (7.17.26016): starting
17:58:43 (2788): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/11/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5cf98d83ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7a0355045330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7a035509eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7a035504527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7a03550288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7a03550297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x7a03550a8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x7a03550ab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7a03550addae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5cf98d85c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5cf98d87b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7a0355045330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7a03550ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7a03550f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7a035512975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5cf98d851adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5cf98d81e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7a035502a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7a035502a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5cf98d81aa3a]

Exiting...
18:03:17 (2778): wrapper (7.17.26016): starting
18:03:17 (2778): wrapper (7.17.26016): starting
18:03:17 (2778): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/11/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x64153d63ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7c7b8ea45330]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x7c7b8eaadd55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x64153d65c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x64153d67b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7c7b8ea45330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7c7b8eaecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7c7b8eaf9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7c7b8eb2975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x64153d651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x64153d61e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7c7b8ea2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7c7b8ea2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x64153d61aa3a]

Exiting...
19:16:21 (2901): wrapper (7.17.26016): starting
19:16:21 (2901): wrapper (7.17.26016): starting
19:16:21 (2901): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/11/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x61d2e8c3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x77caa9a45330]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x77caa9aadd55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x61d2e8c5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x61d2e8c7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x77caa9a45330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x77caa9aecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x77caa9af9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x77caa9b2975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x61d2e8c51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x61d2e8c1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x77caa9a2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x77caa9a2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x61d2e8c1aa3a]

Exiting...
09:54:44 (2908): wrapper (7.17.26016): starting
09:54:45 (2908): wrapper (7.17.26016): starting
09:54:45 (2908): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/11/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
14:37:10 (2908): cmdock exited; CPU time 16806.675914
14:37:10 (2908): called boinc_finish(0)

</stderr_txt>
]]>