Task 99121088

Name	ebola_RdRp_v1_sidock_00523552_r4_s-24.0_0
Workunit	69636224
Created	31 Jan 2026, 23:53:09 UTC
Sent	1 Feb 2026, 15:04:52 UTC
Report deadline	5 Feb 2026, 15:04:52 UTC
Received	2 Feb 2026, 20:47:48 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	83028
Run time	1 days 2 hours 45 min 49 sec
CPU time	1 days 2 hours 39 min 15 sec
Validate state	Valid
Credit	792.89
Device peak FLOPS	1.00 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	240.32 MB
Peak swap size	247.19 MB
Peak disk usage	20.46 MB
Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
11:32:42 (15779): wrapper (7.17.26016): starting
11:32:42 (15779): wrapper (7.17.26016): starting
11:32:42 (15779): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x555dc323ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7ba65aa45330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7ba65aa9eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7ba65aa4527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7ba65aa288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7ba65aa297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x7ba65aaa8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x7ba65aaab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7ba65aaaddae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x555dc325c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x555dc327b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7ba65aa45330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7ba65aaecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7ba65aaf9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7ba65ab2975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x555dc3251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x555dc321e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7ba65aa2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7ba65aa2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x555dc321aa3a]

Exiting...
17:58:42 (2787): wrapper (7.17.26016): starting
17:58:43 (2787): wrapper (7.17.26016): starting
17:58:43 (2787): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5938b043ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7d9011045330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7d901109eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7d901104527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7d90110288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7d90110297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x7d90110a8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x7d90110ab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7d90110addae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5938b045c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5938b047b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7d9011045330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7d90110ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7d90110f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7d901112975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5938b0451adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5938b041e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7d901102a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7d901102a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5938b041aa3a]

Exiting...
18:03:17 (2777): wrapper (7.17.26016): starting
18:03:17 (2777): wrapper (7.17.26016): starting
18:03:17 (2777): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x558bb423ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7d7610845330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7d761089eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7d761084527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7d76108288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7d76108297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x7d76108a8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x7d76108ab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7d76108addae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x558bb425c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x558bb427b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7d7610845330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7d76108ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7d76108f9a27]
/lib/x86_64-linux-gnu/libc.so.6(sleep+0x43)[0x7d761090ec93]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51a9a)[0x558bb4251a9a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x558bb421e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7d761082a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7d761082a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x558bb421aa3a]

Exiting...
19:16:21 (2900): wrapper (7.17.26016): starting
19:16:21 (2900): wrapper (7.17.26016): starting
19:16:21 (2900): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x61e36103ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7d0e0ae45330]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x7d0e0aeadd55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x61e36105c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x61e36107b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7d0e0ae45330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7d0e0aeecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7d0e0aef9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7d0e0af2975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x61e361051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x61e36101e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7d0e0ae2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7d0e0ae2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x61e36101aa3a]

Exiting...
09:54:44 (2907): wrapper (7.17.26016): starting
09:54:45 (2907): wrapper (7.17.26016): starting
09:54:45 (2907): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
14:47:36 (2907): cmdock exited; CPU time 17415.837360
14:47:36 (2907): called boinc_finish(0)

</stderr_txt>
]]>