Task 99183560

Name ebola_RdRp_v1_sidock_00539129_r2_s-24.0_0
Workunit 69698530
Created 1 Feb 2026, 0:48:44 UTC
Sent 4 Feb 2026, 13:31:12 UTC
Report deadline 8 Feb 2026, 13:31:12 UTC
Received 6 Feb 2026, 4:08:59 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 77533
Run time 11 hours 25 min 23 sec
CPU time 11 hours 17 min 31 sec
Validate state Valid
Credit 610.20
Device peak FLOPS 8.07 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 240.28 MB
Peak swap size 247.46 MB
Peak disk usage 20.23 MB

Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
22:38:49 (1083348): wrapper (7.17.26016): starting
22:38:49 (1083348): wrapper (7.17.26016): starting
22:38:49 (1083348): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/ito-a520m/slots/2/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid size
SIGABRT: abort called
Stack trace (21 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c) [0x561acbe3ff8c]
/usr/lib/libc.so.6(+0x3e4d0) [0x7ff25d13a4d0]
/usr/lib/libc.so.6(+0x9890c) [0x7ff25d19490c]
/usr/lib/libc.so.6(gsignal+0x20) [0x7ff25d13a3a0]
/usr/lib/libc.so.6(abort+0x26) [0x7ff25d12157a]
/usr/lib/libc.so.6(+0x26613) [0x7ff25d122613]
/usr/lib/libc.so.6(+0xa2d25) [0x7ff25d19ed25]
/usr/lib/libc.so.6(+0xa2d44) [0x7ff25d19ed44]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd) [0x561acbe5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4) [0x561acbe7b8e4]
/usr/lib/libc.so.6(+0x3e4d0) [0x7ff25d13a4d0]
/usr/lib/libc.so.6(+0x9efe2) [0x7ff25d19afe2]
/usr/lib/libc.so.6(+0x9316c) [0x7ff25d18f16c]
/usr/lib/libc.so.6(clock_nanosleep+0x32) [0x7ff25d1dfc12]
/usr/lib/libc.so.6(nanosleep+0x17) [0x7ff25d1ebc97]
/usr/lib/libc.so.6(usleep+0x4a) [0x7ff25d21657a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf) [0x561acbe51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784) [0x561acbe1e784]
/usr/lib/libc.so.6(+0x27635) [0x7ff25d123635]
/usr/lib/libc.so.6(__libc_start_main+0x89) [0x7ff25d1236e9]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a) [0x561acbe1aa3a]

Exiting...
10:06:00 (12986): wrapper (7.17.26016): starting
10:06:00 (12986): wrapper (7.17.26016): starting
10:06:00 (12986): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/ito-a520m/slots/2/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
10:16:38 (79520): wrapper (7.17.26016): starting
10:16:38 (79520): wrapper (7.17.26016): starting
10:16:38 (79520): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/ito-a520m/slots/2/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
13:08:40 (79520): cmdock exited; CPU time 8090.980533
13:08:40 (79520): called boinc_finish(0)

</stderr_txt>
]]>


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