Task 99183576

Name ebola_RdRp_v1_sidock_00539133_r2_s-24.0_0
Workunit 69698546
Created 1 Feb 2026, 0:48:45 UTC
Sent 4 Feb 2026, 13:31:12 UTC
Report deadline 8 Feb 2026, 13:31:12 UTC
Received 6 Feb 2026, 2:37:50 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 77533
Run time 11 hours 11 min 38 sec
CPU time 11 hours 3 min 46 sec
Validate state Valid
Credit 603.17
Device peak FLOPS 8.07 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 240.94 MB
Peak swap size 247.91 MB
Peak disk usage 20.32 MB

Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
22:38:18 (1077927): wrapper (7.17.26016): starting
22:38:19 (1077927): wrapper (7.17.26016): starting
22:38:19 (1077927): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/ito-a520m/slots/12/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid size
SIGABRT: abort called
Stack trace (21 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c) [0x5630d863ff8c]
/usr/lib/libc.so.6(+0x3e4d0) [0x7fb138d804d0]
/usr/lib/libc.so.6(+0x9890c) [0x7fb138dda90c]
/usr/lib/libc.so.6(gsignal+0x20) [0x7fb138d803a0]
/usr/lib/libc.so.6(abort+0x26) [0x7fb138d6757a]
/usr/lib/libc.so.6(+0x26613) [0x7fb138d68613]
/usr/lib/libc.so.6(+0xa2d25) [0x7fb138de4d25]
/usr/lib/libc.so.6(+0xa2d44) [0x7fb138de4d44]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd) [0x5630d865c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4) [0x5630d867b8e4]
/usr/lib/libc.so.6(+0x3e4d0) [0x7fb138d804d0]
/usr/lib/libc.so.6(+0x9efe2) [0x7fb138de0fe2]
/usr/lib/libc.so.6(+0x9316c) [0x7fb138dd516c]
/usr/lib/libc.so.6(clock_nanosleep+0x32) [0x7fb138e25c12]
/usr/lib/libc.so.6(nanosleep+0x17) [0x7fb138e31c97]
/usr/lib/libc.so.6(usleep+0x4a) [0x7fb138e5c57a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf) [0x5630d8651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784) [0x5630d861e784]
/usr/lib/libc.so.6(+0x27635) [0x7fb138d69635]
/usr/lib/libc.so.6(__libc_start_main+0x89) [0x7fb138d696e9]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a) [0x5630d861aa3a]

Exiting...
10:06:00 (12985): wrapper (7.17.26016): starting
10:06:00 (12985): wrapper (7.17.26016): starting
10:06:00 (12985): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/ito-a520m/slots/12/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
10:16:38 (79519): wrapper (7.17.26016): starting
10:16:38 (79519): wrapper (7.17.26016): starting
10:16:38 (79519): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/ito-a520m/slots/12/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
11:37:31 (79519): cmdock exited; CPU time 4790.884043
11:37:31 (79519): called boinc_finish(0)

</stderr_txt>
]]>


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