Task 99252111

Name	ebola_RdRp_v1_sidock_00554319_r2_s-24.0_0
Workunit	69759290
Created	5 Feb 2026, 0:21:53 UTC
Sent	7 Feb 2026, 14:31:22 UTC
Report deadline	11 Feb 2026, 14:31:22 UTC
Received	9 Feb 2026, 14:41:18 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	82021
Run time	14 hours 49 min 10 sec
CPU time	14 hours 46 min 50 sec
Validate state	Valid
Credit	700.80
Device peak FLOPS	7.43 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	241.09 MB
Peak swap size	247.91 MB
Peak disk usage	20.42 MB
Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
14:31:28 (15114): wrapper (7.17.26016): starting
14:31:28 (15114): wrapper (7.17.26016): starting
14:31:28 (15114): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
15:14:49 (20369): wrapper (7.17.26016): starting
15:14:49 (20369): wrapper (7.17.26016): starting
15:14:49 (20369): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
16:53:54 (83353): wrapper (7.17.26016): starting
16:53:54 (83353): wrapper (7.17.26016): starting
16:53:54 (83353): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
16:59:49 (83382): wrapper (7.17.26016): starting
16:59:49 (83382): wrapper (7.17.26016): starting
16:59:49 (83382): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
17:29:38 (91387): wrapper (7.17.26016): starting
17:29:38 (91387): wrapper (7.17.26016): starting
17:29:38 (91387): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
17:46:55 (93359): wrapper (7.17.26016): starting
17:46:55 (93359): wrapper (7.17.26016): starting
17:46:55 (93359): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
18:19:38 (94913): wrapper (7.17.26016): starting
18:19:38 (94913): wrapper (7.17.26016): starting
18:19:38 (94913): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
18:53:25 (117653): wrapper (7.17.26016): starting
18:53:25 (117653): wrapper (7.17.26016): starting
18:53:25 (117653): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
19:38:16 (131432): wrapper (7.17.26016): starting
19:38:16 (131432): wrapper (7.17.26016): starting
19:38:16 (131432): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
19:50:43 (131655): wrapper (7.17.26016): starting
19:50:43 (131655): wrapper (7.17.26016): starting
19:50:43 (131655): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:48:57 (172536): wrapper (7.17.26016): starting
21:48:57 (172536): wrapper (7.17.26016): starting
21:48:57 (172536): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
22:06:26 (174411): wrapper (7.17.26016): starting
22:06:26 (174411): wrapper (7.17.26016): starting
22:06:26 (174411): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
08:58:46 (3619): wrapper (7.17.26016): starting
08:58:46 (3619): wrapper (7.17.26016): starting
08:58:46 (3619): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
09:14:30 (4667): wrapper (7.17.26016): starting
09:14:30 (4667): wrapper (7.17.26016): starting
09:14:30 (4667): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
09:27:18 (5008): wrapper (7.17.26016): starting
09:27:19 (5008): wrapper (7.17.26016): starting
09:27:19 (5008): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
09:31:14 (5062): wrapper (7.17.26016): starting
09:31:14 (5062): wrapper (7.17.26016): starting
09:31:14 (5062): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (16 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c) [0x55f1aca3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x3fdf0) [0x7feb7f433df0]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x22) [0x7feb7f497262]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd) [0x55f1aca5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4) [0x55f1aca7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x3fdf0) [0x7feb7f433df0]
/lib/x86_64-linux-gnu/libc.so.6(+0x9a9ee) [0x7feb7f48e9ee]
/lib/x86_64-linux-gnu/libc.so.6(+0x8f668) [0x7feb7f483668]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x2a) [0x7feb7f4cff7a]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x13) [0x7feb7f4db393]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x43) [0x7feb7f504373]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf) [0x55f1aca51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784) [0x55f1aca1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29ca8) [0x7feb7f41dca8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x85) [0x7feb7f41dd65]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a) [0x55f1aca1aa3a]

Exiting...
13:38:21 (2446): wrapper (7.17.26016): starting
13:38:21 (2446): wrapper (7.17.26016): starting
13:38:21 (2446): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (16 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c) [0x55734d03ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x3fdf0) [0x7f3b1faeedf0]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x22) [0x7f3b1fb52262]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd) [0x55734d05c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4) [0x55734d07b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x3fdf0) [0x7f3b1faeedf0]
/lib/x86_64-linux-gnu/libc.so.6(+0x9a9ee) [0x7f3b1fb499ee]
/lib/x86_64-linux-gnu/libc.so.6(+0x8f668) [0x7f3b1fb3e668]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x2a) [0x7f3b1fb8af7a]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x13) [0x7f3b1fb96393]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x43) [0x7f3b1fbbf373]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf) [0x55734d051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784) [0x55734d01e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29ca8) [0x7f3b1fad8ca8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x85) [0x7f3b1fad8d65]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a) [0x55734d01aa3a]

Exiting...
11:45:48 (2478): wrapper (7.17.26016): starting
11:45:49 (2478): wrapper (7.17.26016): starting
11:45:49 (2478): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (16 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c) [0x55ebc083ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x3fdf0) [0x7fe14b058df0]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x22) [0x7fe14b0bc262]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd) [0x55ebc085c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4) [0x55ebc087b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x3fdf0) [0x7fe14b058df0]
/lib/x86_64-linux-gnu/libc.so.6(+0x9a9ee) [0x7fe14b0b39ee]
/lib/x86_64-linux-gnu/libc.so.6(+0x8f668) [0x7fe14b0a8668]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x2a) [0x7fe14b0f4f7a]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x13) [0x7fe14b100393]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x43) [0x7fe14b129373]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf) [0x55ebc0851adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784) [0x55ebc081e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29ca8) [0x7fe14b042ca8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x85) [0x7fe14b042d65]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a) [0x55ebc081aa3a]

Exiting...
14:12:18 (2462): wrapper (7.17.26016): starting
14:12:19 (2462): wrapper (7.17.26016): starting
14:12:19 (2462): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
14:41:02 (2462): cmdock exited; CPU time 1721.266514
14:41:02 (2462): called boinc_finish(0)

</stderr_txt>
]]>