Task 99702082

Name ebola_RdRp_v1_sidock_00656556_r1_s-24.0_0
Workunit 70168237
Created 25 Feb 2026, 12:55:08 UTC
Sent 28 Feb 2026, 22:31:50 UTC
Report deadline 4 Mar 2026, 22:31:50 UTC
Received 2 Mar 2026, 3:39:10 UTC
Server state Over
Outcome Validate error
Client state Done
Exit status 0 (0x00000000)
Computer ID 81825
Run time 2 sec
CPU time 2 sec
Validate state Invalid
Credit 0.00
Device peak FLOPS 4.53 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 34.36 MB
Peak swap size 42.09 MB
Peak disk usage 20.22 MB

Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
00:31:48 (20416): wrapper (7.17.26016): starting
00:31:48 (20416): wrapper (7.17.26016): starting
00:31:48 (20416): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/12/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5fb4d123ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x733af4645330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x733af469eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x733af464527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x733af46288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x733af46297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x733af46a8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x733af46ab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x733af46addce]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5fb4d125c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5fb4d127b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x733af4645330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x733af46ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x733af46f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x733af472975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5fb4d1251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5fb4d121e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x733af462a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x733af462a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5fb4d121aa3a]

Exiting...
22:24:07 (13941): wrapper (7.17.26016): starting
22:24:07 (13941): wrapper (7.17.26016): starting
22:24:07 (13941): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/12/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
04:38:36 (6503): wrapper (7.17.26016): starting
04:38:36 (6503): wrapper (7.17.26016): starting
04:38:36 (6503): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/12/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
04:38:56 (6503): cmdock exited; CPU time 2.795488
04:38:56 (6503): called boinc_finish(0)

</stderr_txt>
]]>


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