Task 99941960

Name ebola_RdRp_v1_sidock_00709582_r1_s-24.0_0
Workunit 70380341
Created 11 Mar 2026, 0:42:04 UTC
Sent 12 Mar 2026, 17:40:45 UTC
Report deadline 16 Mar 2026, 17:40:45 UTC
Received 14 Mar 2026, 2:24:09 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 60430
Run time 8 hours 28 min 22 sec
CPU time 8 hours 28 min 12 sec
Validate state Valid
Credit 593.20
Device peak FLOPS 9.62 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 240.43 MB
Peak swap size 247.50 MB
Peak disk usage 20.30 MB

Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
03:15:27 (308327): wrapper (7.17.26016): starting
03:15:27 (308327): wrapper (7.17.26016): starting
03:15:27 (308327): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5b870ea3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7b7475245330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7b747529eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7b747524527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7b74752288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7b74752297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x7b74752a8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x7b74752ab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7b74752addce]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5b870ea5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5b870ea7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7b7475245330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7b74752ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7b74752f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7b747532975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5b870ea51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5b870ea1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7b747522a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7b747522a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5b870ea1aa3a]

Exiting...
09:28:29 (4089): wrapper (7.17.26016): starting
09:28:29 (4089): wrapper (7.17.26016): starting
09:28:29 (4089): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:00:03 (86987): wrapper (7.17.26016): starting
21:00:03 (86987): wrapper (7.17.26016): starting
21:00:03 (86987): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:23:58 (86987): cmdock exited; CPU time 1435.010008
21:23:58 (86987): called boinc_finish(0)

</stderr_txt>
]]>


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