Task 99971406

Name ebola_RdRp_v1_sidock_00716939_r3_s-24.0_0
Workunit 70409771
Created 11 Mar 2026, 1:06:05 UTC
Sent 13 Mar 2026, 20:45:22 UTC
Report deadline 17 Mar 2026, 20:45:22 UTC
Received 15 Mar 2026, 0:50:38 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 83771
Run time 1 days 1 hours 50 min 21 sec
CPU time 1 days 1 hours 21 min 56 sec
Validate state Valid
Credit 481.68
Device peak FLOPS 1.00 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 240.00 MB
Peak swap size 246.81 MB
Peak disk usage 20.37 MB

Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
16:45:41 (2290332): wrapper (7.17.26016): starting
16:45:42 (2290332): wrapper (7.17.26016): starting
16:45:42 (2290332): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/2/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (21 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c) [0x55d6a4e3ff8c]
/lib64/libc.so.6(+0x1a290) [0x7fd70e55a290]
/lib64/libc.so.6(+0x743cc) [0x7fd70e5b43cc]
/lib64/libc.so.6(gsignal+0x1e) [0x7fd70e55a15e]
/lib64/libc.so.6(abort+0x26) [0x7fd70e5416d0]
/lib64/libc.so.6(+0x273b) [0x7fd70e54273b]
/lib64/libc.so.6(+0x7e665) [0x7fd70e5be665]
/lib64/libc.so.6(+0x7e684) [0x7fd70e5be684]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd) [0x55d6a4e5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4) [0x55d6a4e7b8e4]
/lib64/libc.so.6(+0x1a290) [0x7fd70e55a290]
/lib64/libc.so.6(+0x7a9a2) [0x7fd70e5ba9a2]
/lib64/libc.so.6(+0x6ec3c) [0x7fd70e5aec3c]
/lib64/libc.so.6(clock_nanosleep+0x32) [0x7fd70e5feba2]
/lib64/libc.so.6(nanosleep+0x17) [0x7fd70e60ab77]
/lib64/libc.so.6(usleep+0x4a) [0x7fd70e63517a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf) [0x55d6a4e51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784) [0x55d6a4e1e784]
/lib64/libc.so.6(+0x35b5) [0x7fd70e5435b5]
/lib64/libc.so.6(__libc_start_main+0x88) [0x7fd70e543668]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a) [0x55d6a4e1aa3a]

Exiting...
01:32:41 (1845): wrapper (7.17.26016): starting
01:32:41 (1845): wrapper (7.17.26016): starting
01:32:41 (1845): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/2/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
08:06:30 (1827): wrapper (7.17.26016): starting
08:06:30 (1827): wrapper (7.17.26016): starting
08:06:30 (1827): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/2/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
18:50:29 (1827): cmdock exited; CPU time 37923.478418
18:50:29 (1827): called boinc_finish(0)

</stderr_txt>
]]>


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