Task 99983296

Name ebola_RdRp_v1_sidock_00719904_r1_s-24.0_0
Workunit 70421629
Created 11 Mar 2026, 1:16:03 UTC
Sent 14 Mar 2026, 8:13:21 UTC
Report deadline 18 Mar 2026, 8:13:21 UTC
Received 15 Mar 2026, 12:06:30 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 83771
Run time 1 days 2 hours 22 min 20 sec
CPU time 1 days 1 hours 57 min 5 sec
Validate state Valid
Credit 496.31
Device peak FLOPS 1.00 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 238.96 MB
Peak swap size 246.16 MB
Peak disk usage 20.32 MB

Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
03:34:30 (177195): wrapper (7.17.26016): starting
03:34:30 (177195): wrapper (7.17.26016): starting
03:34:30 (177195): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (21 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c) [0x559f20a3ff8c]
/lib64/libc.so.6(+0x1a290) [0x7f18002ca290]
/lib64/libc.so.6(+0x743cc) [0x7f18003243cc]
/lib64/libc.so.6(gsignal+0x1e) [0x7f18002ca15e]
/lib64/libc.so.6(abort+0x26) [0x7f18002b16d0]
/lib64/libc.so.6(+0x273b) [0x7f18002b273b]
/lib64/libc.so.6(+0x7e665) [0x7f180032e665]
/lib64/libc.so.6(+0x7e684) [0x7f180032e684]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd) [0x559f20a5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4) [0x559f20a7b8e4]
/lib64/libc.so.6(+0x1a290) [0x7f18002ca290]
/lib64/libc.so.6(+0x7a9a2) [0x7f180032a9a2]
/lib64/libc.so.6(+0x6ec3c) [0x7f180031ec3c]
/lib64/libc.so.6(clock_nanosleep+0x32) [0x7f180036eba2]
/lib64/libc.so.6(nanosleep+0x17) [0x7f180037ab77]
/lib64/libc.so.6(usleep+0x4a) [0x7f18003a517a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf) [0x559f20a51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784) [0x559f20a1e784]
/lib64/libc.so.6(+0x35b5) [0x7f18002b35b5]
/lib64/libc.so.6(__libc_start_main+0x88) [0x7f18002b3668]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a) [0x559f20a1aa3a]

Exiting...
08:06:30 (1829): wrapper (7.17.26016): starting
08:06:30 (1829): wrapper (7.17.26016): starting
08:06:30 (1829): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
06:06:18 (1829): cmdock exited; CPU time 77592.340705
06:06:18 (1829): called boinc_finish(0)

</stderr_txt>
]]>


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