Task 99984653

Name ebola_RdRp_v1_sidock_00698854_r3_s-24.0_1
Workunit 70337431
Created 11 Mar 2026, 13:49:32 UTC
Sent 14 Mar 2026, 9:10:26 UTC
Report deadline 18 Mar 2026, 9:10:26 UTC
Received 15 Mar 2026, 3:48:43 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 80660
Run time 5 hours 45 min 48 sec
CPU time 5 hours 44 min 25 sec
Validate state Valid
Credit 516.65
Device peak FLOPS 10.40 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 240.16 MB
Peak swap size 248.21 MB
Peak disk usage 20.22 MB

Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
02:10:34 (215964): wrapper (7.17.26016): starting
02:10:34 (215964): wrapper (7.17.26016): starting
02:10:34 (215964): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/17/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (21 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c) [0x560b0463ff8c]
/usr/lib/libc.so.6(+0x44a40) [0x7f7141a44a40]
/usr/lib/libc.so.6(pthread_kill+0x12b) [0x7f7141aabbcb]
/usr/lib/libc.so.6(gsignal+0x18) [0x7f7141a44908]
/usr/lib/libc.so.6(abort+0x27) [0x7f7141a256c3]
/usr/lib/libc.so.6(+0x2692a) [0x7f7141a2692a]
/usr/lib/libc.so.6(+0xb692e) [0x7f7141ab692e]
/usr/lib/libc.so.6(+0xb6941) [0x7f7141ab6941]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd) [0x560b0465c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4) [0x560b0467b8e4]
/usr/lib/libc.so.6(+0x44a40) [0x7f7141a44a40]
/usr/lib/libc.so.6(+0xb2422) [0x7f7141ab2422]
/usr/lib/libc.so.6(+0xa5e4f) [0x7f7141aa5e4f]
/usr/lib/libc.so.6(clock_nanosleep+0x2e) [0x7f7141afa2de]
/usr/lib/libc.so.6(nanosleep+0x17) [0x7f7141b0a4f7]
/usr/lib/libc.so.6(usleep+0x4b) [0x7f7141b401fb]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf) [0x560b04651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784) [0x560b0461e784]
/usr/lib/libc.so.6(+0x27c0e) [0x7f7141a27c0e]
/usr/lib/libc.so.6(__libc_start_main+0x8b) [0x7f7141a27d4b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a) [0x560b0461aa3a]

Exiting...
15:16:13 (19433): wrapper (7.17.26016): starting
15:16:13 (19433): wrapper (7.17.26016): starting
15:16:13 (19433): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/17/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
20:48:26 (19433): cmdock exited; CPU time 19509.629236
20:48:26 (19433): called boinc_finish(0)

</stderr_txt>
]]>


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