Posts by Jim1348

41) Message boards : News : 2020-12-04: progress report (Message 321)
Posted 20 Dec 2020 by Jim1348
Post:
What language is this you speak? Ligands, in silico, chemical subspace representations? Time to swot up.

That is what you will see on Folding, Rosetta and others in the field. Time to upgrade.
42) Message boards : Number crunching : WU download error (Message 293)
Posted 19 Dec 2020 by Jim1348
Post:
The reported errors seem to be mainly on Windows.
But I just picked up four on Ubuntu 18.04.5 also.
https://www.sidock.si/sidock/results.php?hostid=988&offset=0&show_names=0&state=6&appid=
43) Message boards : News : New application: CurieMarieDock (Message 230)
Posted 7 Dec 2020 by Jim1348
Post:
Now average processing rates are changed and CurieDock is the faster one...

Yes, I see that too. Good work.
44) Message boards : News : New application: CurieMarieDock (Message 224)
Posted 5 Dec 2020 by Jim1348
Post:
It looks like CurieDock is slower than RxDock on Linux.
That is my conclusion too, having completed over 100 total (about equal of each) on two different Ubuntu machines, one Intel and one Ryzen.
45) Message boards : Number crunching : CurieDock 1.03 fails (Message 214)
Posted 4 Dec 2020 by Jim1348
Post:
My one and only CurieDock 1.02 completed successfully, but the next three 1.03 failed thus far on an Ubuntu 20.04.1 machine.
https://fightcovid.boinc.ru/sidocktest/results.php?hostid=353&offset=0&show_names=0&state=0&appid=9
46) Message boards : Number crunching : GPU? (Message 180)
Posted 28 Nov 2020 by Jim1348
Post:
Thanks for checking. It is OK as a CPU project for me.
47) Message boards : Number crunching : GPU? (Message 174)
Posted 26 Nov 2020 by Jim1348
Post:
No one has asked about GPUs, which shows remarkable restraint. But it is used on Autodock (as with Quarantine@Home), and of course WCG/Open Pandemics is trying to make it work too. So there would seem to be some possibility here.

I am not sure that there is an advantage with efficiency (output per watt) as compared to a CPU, but it could be faster. Also, it would not be a good idea if it confuses the results. So I am not exactly waiting for it, but wondering.
48) Message boards : News : App version 12.1 (Windows 64bit) (Message 148)
Posted 17 Nov 2020 by Jim1348
Post:
I see you released Linux ones too. They are running around an hour on an i7-8700 (Ubuntu 18.04).
The estimates seem to be OK after they run for a while. It is much better to get stability than greater accuracy.
49) Message boards : News : Disabling task generation for Windows (Message 142)
Posted 16 Nov 2020 by Jim1348
Post:
They are running fine under Linux. I have finished two.
50) Message boards : News : Disabling task generation for Windows (Message 139)
Posted 16 Nov 2020 by Jim1348
Post:
When this workunits complete it's lifecycle we will recreate them for new application..

I am seeing all failures on Linux for 11.08.

Should I allow them to run to clear them out,or set No new tasks to stop them?
51) Message boards : Science : COVID-19 news (Message 82)
Posted 7 Nov 2020 by Jim1348
Post:
Common cold antibodies yield clues to COVID-19 behavior
Among people who were never infected with the new coronavirus, a few adults - and many children - may have antibodies that can neutralize the virus, researchers reported on Friday in Science. Among 302 such adults, 16 (5.3%) had antibodies, likely generated during infections with "common cold" coronaviruses, that reacted to a specific region of the spike protein on the new virus called the S2 subunit. Among 48 children and adolescents, 21 (43.8%) had these antibodies. In test tube experiments, blood serum from both older and younger uninfected individuals with cross-reactive antibodies could neutralize the new coronavirus. That was not the case with serum from study participants who lacked these antibodies. "Together, these findings may help explain higher COVID-19 susceptibility in older people and provide insight into whether pre-established immunity to seasonal coronaviruses offers protection against SARS-CoV-2," the publishers of the journal said in a statement. The findings also suggest that targeting the S2 subunit on the coronavirus spike protein might be the basis for a drug or vaccine that works on multiple types of coronavirus. (https://bit.ly/3evCSFB)
https://news.yahoo.com/common-cold-antibodies-hold-clues-184410434.html
52) Message boards : Science : COVID-19 news (Message 68)
Posted 6 Nov 2020 by Jim1348
Post:
OK, first the Good News:
http://www.dailymagazine.news/aspirin-could-be-key-in-helping-covid-19-patients-recover-nid-1351740.html

Now the Bad News:
https://www.bbc.com/news/science-environment-54842643

And a bit more Good News:
https://www.nytimes.com/2020/11/05/health/coronavirus-ferrets-vaccine-spray.html (may require subscription)
https://thehill.com/changing-america/well-being/prevention-cures/524785-nasal-spray-prevents-covid-19-infection-in-test (free version)
53) Message boards : Number crunching : What is RxDock? (Message 47)
Posted 31 Oct 2020 by Jim1348
Post:
Thanks. That gives a good overview.
54) Message boards : Number crunching : What is RxDock? (Message 45)
Posted 30 Oct 2020 by Jim1348
Post:
It appears that you are not using Autodock.
Did you create RxDock yourselves?

How is it different?

Thanks.


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