1) Message boards : News : Project status: March 2022 (Message 1608) Posted 26 Mar 2022 by Crtomir Post: Dear colleagues, I must say that the project SiDock@HOME is not related to any political option. The core of the project are the international team of independelnt scientists and our only goal is to explore chemical space to find candidate compounds that potentialy bind to various druggable targets of SARS-CoV-2 and in future also for other pathogens. I join to Natalia message to avoid political discussion on this forum, and of course anyone has the right to stop supporting our scientific project anytime and for any reason. All the best, and hope that all wars in the world will stop forever. Let’s give peace a chance. https://m.youtube.com/watch?v=5AtP1JGNl7A Črtomir

2) Message boards : News : SiDock@home September Sailing (Message 1225) Posted 22 Sep 2021 by Crtomir Post: Congratulation to all teams and especially Planet3DNow for the victory. ;-) Crtomir

3) Message boards : News : 4000 users with credit (Message 1221) Posted 21 Sep 2021 by Crtomir Post: Dear SiDockers, new breakthrough of the project, we will wellcome 4000th user with the credit, very soon. ;-) Crtomir

4) Message boards : Number crunching : 100% (Message 1139) Posted 9 Sep 2021 by Crtomir Post: Dear colleagues, we are working constantly on future relleases of the software to be more effective and user friendly. To release the official version for MacOS we need developer with license to sign the release. All the best, Crtomir

5) Message boards : Science : What is the Nipah virus and why is it more deadly than COVID-19? (Message 1138) Posted 9 Sep 2021 by Crtomir Post: Good idea, we should do HTVS also for NIPAH. Do you have an idea which protein to target? Crtomir

6) Message boards : Science : Other uses of docking than viruses? (Message 1107) Posted 12 Aug 2021 by Crtomir Post: Dear all, we are developing the GPU version of CMDOCK together with colleagues from the Faculty of Computer Science, University of Ljubljana. It is not so easy to convert the CPU version to GPU. Basically, colleagues from the Faculty of Computer Science have to rewrite the most important parts of the software. We expect a fully functional version of GPU CMDOCK at the end of this year or the beginning of next year. The GPU version will use OPENCL and run on NVIDIA and AMD graphics cards. All CPU (Win, Linux, macOS and Android) versions will be kept in the project. We will see how all versions will work together and serve the project. Crtomir

7) Questions and Answers : Windows : I have problems with project in my network (Windows 7 with extendent support) (Message 1088) Posted 11 Jul 2021 by Crtomir Post: Excellent. Now, we know that CMDock is running also computers with OS - Windows 7. Crtomir

8) Message boards : News : SiDock@home is going to join Gridcoin (Message 1055) Posted 28 Jun 2021 by Crtomir Post: Excellent. I hope that gridcoins’ rewards would be additional motivation to our volunteers to contribute cpu and gpu (in the future) to pure drug discovery projects lead by SiDock core group. Crtomir

9) Message boards : Science : Visualisation of molecular docking performed (Message 1049) Posted 22 Jun 2021 by Crtomir Post: Dear Natalia, thank you for excellent explanation of the docking proces. (-: Crtomir

10) Message boards : News : SiDock@home becomes a general drug discovery project (Message 969) Posted 25 May 2021 by Crtomir Post: Here is youtube video of presentation in Boincworkshop: https://m.youtube.com/watch?v=bzkFI1HRzLE and Marko’s conclusions of breakout session https://www.youtube.com/channel/UC1YM32SpdGnb1S5b5gUJPyQ Crtomir

11) Message boards : News : SiDock@home becomes a general drug discovery project (Message 967) Posted 25 May 2021 by Crtomir Post: Dear Natalia, many thank for very nice compilation of our work... Slovenian-Russian project. I am proud of our project and all volunteers making the project Global. ;-) Cheers, Crtomir

12) Message boards : Number crunching : The new record in SiDock@HOME project (Message 914) Posted 14 May 2021 by Crtomir Post: more than 61.000 GFlops ;-)

13) Message boards : Number crunching : The new record in SiDock@HOME project (Message 894) Posted 9 May 2021 by Crtomir Post: Over 45000 ;-) Next hurdle at 50000.

14) Message boards : Number crunching : The new record in SiDock@HOME project (Message 893) Posted 8 May 2021 by Crtomir Post: Dear SiDockers, we reached new peak: 42676.96 GigaFlops. How amazing. ;-)

15) Message boards : News : Half a year, the BOINC Workshop and a move to the new server (Message 827) Posted 26 Apr 2021 by Crtomir Post: Natalia, I saw that we are using new server ;-) Cheers, Crtomir

16) Message boards : News : Half a year, the BOINC Workshop and a move to the new server (Message 823) Posted 24 Apr 2021 by Crtomir Post: I hope that we will install new server before Boinc Pentatlon ;-) Crtomir

17) Message boards : News : BoincWorkshop 2 (Message 804) Posted 21 Apr 2021 by Crtomir Post: From chat in BoincWorksop Day 2 "I'm seeing far fewer people interested in running BOINC and many are giving up due to too few "legitimate" projects continuing their research - too many projects have used volunteers and then stopped." "So, we need more "interesting" projects so people can crunch them...far more people got involved with SiDock, Rosetta and WCG when they launched Covid-19 research tasks..". Our community is on the right way ;-) Crtomir

18) Message boards : Number crunching : No checkpoints? (Message 801) Posted 19 Apr 2021 by Crtomir Post: Dear Boincers, we are working to solve the checkpoint issue, which is critical in the case of long-running docking problems. E-protein has a relatively large binding site and it takes more time to sample configurations/conformations of the ligand within the binding site. The suggestions to split WU into smaller ones seems a good idea, in this intermediate time. To provide better experience and some changes will be done soon: * we will add new server (s) to the project * we will increase diskspace (this is probably the most urgent) * I hope that we will hardcoded checkpointing very soon (very top on our task list) All the best, Crtomir

19) Message boards : Number crunching : Mac MarieCurie app WUs percent zeroing out on close out. (Message 776) Posted 10 Apr 2021 by Crtomir Post: Checkpointing is our prority. We will solve this ASAP. Crtomir

20) Message boards : Science : Other uses of docking than viruses? (Message 768) Posted 3 Apr 2021 by Crtomir Post: Dear Jim, we are currently working on development of the GPU version of CMDock. We are pretty sure, that with GPU version we will accelerate our research. All the best, Crtomir

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